Format graphql query online11/30/2023 The search API programmatically exposes all search functionality available at. To use it programmatically POST your GraphQL queries under the /graphql endpoint.Īll output from both REST and GraphQL interfaces is offered in JSON format. The GraphQL interface offers more flexible data retrieval, essentially making it possible to grab any piece of data from any level of the hierarchy in a single query. The REST API permits the retrieval of all data for one core object at a time. The data is available via 2 different interfaces: REST API Full Reference Additionally every core object contains a single string identifier in field rcsb_id. In each core object, the rcsb_container_identifiers field holds the cardinal identifiers for the objects and any parent/child. Identified by a unique alphanumeric code chem_comp_idīoth internal additions to the mmCIF dictionary and external resources annotations are prefixed with rcsb_. Identified by entry ID and asym ID separated by a _ character core_polymer_entity_instance: an instance of a certain polymeric molecular entity, also known as chain.Identified by entry ID and assembly ID separated by a _ character core_assembly: data for each biological assembly in an entry.Identified by entry ID and entity ID separated by a _ character core_branched_entity: data for branched molecules (e.g., oligosaccharides).core_nonpolymer_entity: data for each non-polymeric small chemical entity in an entry (e.g., enzyme cofactors, ligands, ions, etc).Identified by entry ID and entity ID separated by a _ character, e.g. core_polymer_entity: data for each polymeric molecular entity in an entry (e.g., protein, DNA, and RNA).Identified by an entry_id, which can be an alphanumeric PDB-ID or a CSM-ID that starts with AF_ or MA_ core_entry: data that relates to a PDB entry or Computed Structure Model (CSM).The core PDB data is split up into core objects, one per level of the structural data hierarchy, with entity subdivided into polymeric and non-polymeric subschemas (differing from the mmCIF dictionary). The schema follows the mmCIF dictionary, extended with annotations coming from external resources. Data APIĪll static data that is exposed in is available in the Data API. Stay up-to-date with API developments by viewing (or subscribing) to the RCSB PDB API announcements Google group. Diversity, Equity, Inclusion, and Access. ![]() Citation, Usage, Privacy Policies, Logo.Biologically Interesting Molecule Reference Dictionary (BIRD).
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